Index

A

AbidePcpDataset (class in nidata.resting_state) (class in nidata.resting_state.ABIDE_pcp) AdhdRestDataset (class in nidata.resting_state) (class in nidata.resting_state.adhd)

AmazonS3Fetcher (class in nidata.core.fetchers) (class in nidata.core.fetchers.aws_fetcher) AuthenticatedHttpDataset (class in nidata.core.datasets)

B

BrainomicsDataset (class in nidata.localizer.brainomics)

C

check_md5() (in module nidata.diffusion), [1] chunk_report() (in module nidata.core.fetchers.base) ClassWithDependencies (class in nidata.core.objdep)

clean_data_directory() (nidata.core.datasets.Dataset method) copytree() (in module nidata.core.fetchers.http_fetcher) Craddock2012Dataset (class in nidata.atlas.craddock_2012)

D

Dataset (class in nidata.core.datasets) dependencies (nidata.anatomical.PING.PINGDataset attribute) (nidata.anatomical.PINGDataset attribute), [1] (nidata.atlas.harvard_oxford.HarvardOxfordDataset attribute) (nidata.atlas.haxby_etal_2011.HaxbyEtal2011Dataset attribute) (nidata.core.datasets.Dataset attribute) (nidata.core.datasets.NilearnDataset attribute) (nidata.core.datasets.NistatsDataset attribute) (nidata.core.fetchers.AmazonS3Fetcher attribute) (nidata.core.fetchers.Fetcher attribute) (nidata.core.fetchers.aws_fetcher.AmazonS3Fetcher attribute) (nidata.core.fetchers.base.Fetcher attribute) (nidata.multimodal.hcp.HcpHttpFetcher attribute) (nidata.task.NeuroVaultDataset attribute) (nidata.task.PoldrackEtal2001Dataset attribute) (nidata.task.neurovault.NeuroVaultDataset attribute) (nidata.task.poldrack_etal_2001.OpenFMriDataset attribute) (nidata.task.poldrack_etal_2001.PoldrackEtal2001Dataset attribute)

DependenciesMeta (class in nidata.core.objdep)

F

fetch() (nidata.anatomical.oasis_vbm.OasisVbmDataset method) (nidata.anatomical.OasisVbmDataset method), [1] (nidata.anatomical.PING.PINGDataset method) (nidata.anatomical.PINGDataset method), [1] (nidata.atlas.craddock_2012.Craddock2012Dataset method) (nidata.atlas.haxby_etal_2011.HaxbyEtal2011Dataset method) (nidata.atlas.icbm152_2009.ICBM152Dataset method) (nidata.atlas.mni152_template.MNI152Dataset method) (nidata.atlas.msdl_atlas.MSDLDataset method) (nidata.atlas.power_2011.Power2011Dataset method) (nidata.core.datasets.Dataset method) (nidata.core.datasets.FetcherFunctionDataset method) (nidata.core.fetchers.AmazonS3Fetcher method) (nidata.core.fetchers.Fetcher method) (nidata.core.fetchers.HttpFetcher method) (nidata.core.fetchers.aws_fetcher.AmazonS3Fetcher method) (nidata.core.fetchers.base.Fetcher method) (nidata.core.fetchers.http_fetcher.HttpFetcher method) (nidata.multimodal.hcp.HcpDataset method) (nidata.multimodal.hcp.HcpHttpFetcher method) (nidata.multimodal.my_connectome_2015.MyConnectome2015Dataset method) (nidata.task.PoldrackEtal2001Dataset method) (nidata.task.poldrack_etal_2001.PoldrackEtal2001Dataset method) fetch_abide_pcp() (in module nidata.resting_state.ABIDE_pcp) fetch_adhd() (in module nidata.resting_state.adhd) fetch_atlas_craddock_2012() (in module nidata.atlas.craddock_2012) fetch_data() (in module nidata.diffusion), [1] fetch_files() (in module nidata.core.fetchers.http_fetcher) fetch_harvard_oxford() (in module nidata.atlas.harvard_oxford) fetch_haxby() (in module nidata.task.haxby_etal_2001) fetch_haxby_simple() (in module nidata.task.haxby_etal_2001) fetch_icbm152_2009() (in module nidata.atlas.icbm152_2009) fetch_isbi2013_2shell() (in module nidata.diffusion), [1] fetch_localizer_calculation_task() (in module nidata.localizer.brainomics) fetch_localizer_contrasts() (in module nidata.localizer.brainomics) fetch_miyawaki2008() (in module nidata.task.miyawaki_2008) fetch_mni152_template() (in module nidata.atlas.mni152_template) fetch_msdl_atlas() (in module nidata.atlas.msdl_atlas) fetch_neurovault() (in module nidata.task.neurovault) fetch_nyu_rest() (in module nidata.resting_state.nyu) fetch_oasis_vbm() (in module nidata.anatomical), [1] (in module nidata.anatomical.oasis_vbm)

fetch_power_2011() (in module nidata.atlas.power_2011) fetch_scil_b0() (in module nidata.diffusion), [1] fetch_sherbrooke_3shell() (in module nidata.diffusion), [1] fetch_smith_2009() (in module nidata.atlas.smith_2009) fetch_stanford_hardi() (in module nidata.diffusion), [1] fetch_stanford_labels() (in module nidata.diffusion), [1] fetch_stanford_pve_maps() (in module nidata.diffusion), [1] fetch_stanford_t1() (in module nidata.diffusion), [1] fetch_syn_data() (in module nidata.diffusion), [1] fetch_taiwan_ntu_dsi() (in module nidata.diffusion), [1] fetch_yeo_2011_atlas() (in module nidata.atlas.yeo_2011) Fetcher (class in nidata.core.fetchers) (class in nidata.core.fetchers.base) fetcher_function (nidata.anatomical.oasis_vbm.OasisVbmDataset attribute) (nidata.anatomical.OasisVbmDataset attribute), [1] (nidata.atlas.craddock_2012.Craddock2012Dataset attribute) (nidata.atlas.harvard_oxford.HarvardOxfordDataset attribute) (nidata.atlas.icbm152_2009.ICBM152Dataset attribute) (nidata.atlas.mni152_template.MNI152Dataset attribute) (nidata.atlas.power_2011.Power2011Dataset attribute) (nidata.atlas.smith_2009.Smith2009Dataset attribute) (nidata.atlas.yeo_2011.Yeo2011Dataset attribute) (nidata.localizer.brainomics.BrainomicsDataset attribute) (nidata.resting_state.ABIDE_pcp.AbidePcpDataset attribute) (nidata.resting_state.AbidePcpDataset attribute) (nidata.resting_state.AdhdRestDataset attribute) (nidata.resting_state.NyuRestDataset attribute) (nidata.resting_state.adhd.AdhdRestDataset attribute) (nidata.resting_state.nyu.NyuRestDataset attribute) (nidata.task.Haxby2001Dataset attribute) (nidata.task.Miyawaki2008Dataset attribute) (nidata.task.NeuroVaultDataset attribute) (nidata.task.haxby_etal_2001.Haxby2001Dataset attribute) (nidata.task.miyawaki_2008.Miyawaki2008Dataset attribute) (nidata.task.neurovault.NeuroVaultDataset attribute) FetcherError, [1] FetcherFunctionDataset (class in nidata.core.datasets) FetcherFunctionMeta (class in nidata.core.datasets) filter_columns() (in module nidata.core.fetchers.base) format_time() (in module nidata.core.fetchers.base)

G

get_anat_files() (nidata.multimodal.hcp.HcpDataset method) get_dataset_descr() (nidata.core.datasets.Dataset class method) get_dataset_descr_path() (nidata.core.datasets.Dataset class method) (nidata.core.datasets.NilearnDataset class method) get_dataset_dir() (in module nidata.core.datasets) get_diff_files() (nidata.multimodal.hcp.HcpDataset method) get_missing_dependencies() (in module nidata.core.objdep) (nidata.core.objdep.ClassWithDependencies class method)

get_rest_files() (nidata.multimodal.hcp.HcpDataset method) get_run_from_path() (nidata.task.poldrack_etal_2001.OpenFMriDataset static method) get_subj_from_path() (nidata.task.poldrack_etal_2001.OpenFMriDataset static method) get_subject_list() (nidata.multimodal.hcp.HcpDataset method) get_task_files() (nidata.multimodal.hcp.HcpDataset method) get_task_from_path() (nidata.task.poldrack_etal_2001.OpenFMriDataset static method)

H

HarvardOxfordDataset (class in nidata.atlas.harvard_oxford) Haxby2001Dataset (class in nidata.task) (class in nidata.task.haxby_etal_2001) HaxbyEtal2011Dataset (class in nidata.atlas.haxby_etal_2011) HcpDataset (class in nidata.multimodal.hcp)

HcpHttpFetcher (class in nidata.multimodal.hcp) HttpDataset (class in nidata.core.datasets) HttpFetcher (class in nidata.core.fetchers) (class in nidata.core.fetchers.http_fetcher)

I

ICBM152Dataset (class in nidata.atlas.icbm152_2009) install_dependency() (in module nidata.core.objdep)

install_missing_dependencies() (nidata.core.objdep.ClassWithDependencies class method)

M

MAX_SUBJECTS (nidata.atlas.haxby_etal_2011.HaxbyEtal2011Dataset attribute) md5_sum_file() (in module nidata.core.fetchers.base) Miyawaki2008Dataset (class in nidata.task) (class in nidata.task.miyawaki_2008) MNI152Dataset (class in nidata.atlas.mni152_template)

mod (nidata.anatomical.PING.PINGDataset attribute) (nidata.anatomical.PINGDataset attribute), [1] (nidata.task.NeuroVaultDataset attribute) (nidata.task.PoldrackEtal2001Dataset attribute) (nidata.task.neurovault.NeuroVaultDataset attribute) (nidata.task.poldrack_etal_2001.PoldrackEtal2001Dataset attribute) movetree() (in module nidata.core.fetchers.http_fetcher) MSDLDataset (class in nidata.atlas.msdl_atlas) MyConnectome2015Dataset (class in nidata.multimodal.my_connectome_2015)

N

NeuroVaultDataset (class in nidata.task) (class in nidata.task.neurovault) nidata (module) nidata.anatomical (module), [1] nidata.anatomical.oasis_vbm (module) nidata.anatomical.PING (module) nidata.atlas (module), [1] nidata.atlas.craddock_2012 (module) nidata.atlas.harvard_oxford (module) nidata.atlas.haxby_etal_2011 (module) nidata.atlas.icbm152_2009 (module) nidata.atlas.mni152_template (module) nidata.atlas.msdl_atlas (module) nidata.atlas.power_2011 (module) nidata.atlas.smith_2009 (module) nidata.atlas.yeo_2011 (module) nidata.core (module), [1] nidata.core.datasets (module) nidata.core.fetchers (module) nidata.core.fetchers.aws_fetcher (module) nidata.core.fetchers.base (module) nidata.core.fetchers.http_fetcher (module)

nidata.core.objdep (module) nidata.diffusion (module), [1] nidata.localizer (module) nidata.localizer.brainomics (module) nidata.multimodal (module) nidata.multimodal.hcp (module) nidata.multimodal.my_connectome_2015 (module) nidata.resting_state (module) nidata.resting_state.ABIDE_pcp (module) nidata.resting_state.adhd (module) nidata.resting_state.nyu (module) nidata.task (module) nidata.task.haxby_etal_2001 (module) nidata.task.miyawaki_2008 (module) nidata.task.neurovault (module) nidata.task.poldrack_etal_2001 (module) nidata.version (module) nilearn_name (nidata.anatomical.oasis_vbm.OasisVbmDataset attribute) (nidata.anatomical.OasisVbmDataset attribute), [1] (nidata.localizer.brainomics.BrainomicsDataset attribute) (nidata.resting_state.NyuRestDataset attribute) (nidata.resting_state.nyu.NyuRestDataset attribute) (nidata.task.Haxby2001Dataset attribute) (nidata.task.haxby_etal_2001.Haxby2001Dataset attribute) NilearnDataset (class in nidata.core.datasets) NistatsDataset (class in nidata.core.datasets) NyuRestDataset (class in nidata.resting_state) (class in nidata.resting_state.nyu)

O

OasisVbmDataset (class in nidata.anatomical), [1] (class in nidata.anatomical.oasis_vbm)

OpenFMriDataset (class in nidata.task.poldrack_etal_2001)

P

PASSWD_ENV_VAR (nidata.anatomical.PING.PINGDataset attribute) (nidata.anatomical.PINGDataset attribute), [1] (nidata.core.datasets.AuthenticatedHttpDataset attribute) PINGDataset (class in nidata.anatomical), [1] (class in nidata.anatomical.PING) PoldrackEtal2001Dataset (class in nidata.task) (class in nidata.task.poldrack_etal_2001)

Power2011Dataset (class in nidata.atlas.power_2011) prepend() (nidata.multimodal.hcp.HcpDataset method) preprocess_files() (nidata.task.poldrack_etal_2001.OpenFMriDataset method)

R

read_isbi2013_2shell() (in module nidata.diffusion), [1] read_scil_b0() (in module nidata.diffusion), [1] read_sherbrooke_3shell() (in module nidata.diffusion), [1] read_siemens_scil_b0() (in module nidata.diffusion), [1] read_stanford_hardi() (in module nidata.diffusion), [1] read_stanford_labels() (in module nidata.diffusion), [1] read_stanford_pve_maps() (in module nidata.diffusion), [1]

read_stanford_t1() (in module nidata.diffusion), [1] read_syn_data() (in module nidata.diffusion), [1] read_taiwan_ntu_dsi() (in module nidata.diffusion), [1] readlinkabs() (in module nidata.core.datasets) readmd5_sum_file() (in module nidata.core.fetchers.base) reformat_files() (nidata.core.fetchers.base.Fetcher class method) (nidata.core.fetchers.Fetcher class method)

S

Smith2009Dataset (class in nidata.atlas.smith_2009)

T

test_cb() (in module nidata.core.fetchers.aws_fetcher)

U

USERNAME_ENV_VAR (nidata.anatomical.PING.PINGDataset attribute) (nidata.anatomical.PINGDataset attribute), [1] (nidata.core.datasets.AuthenticatedHttpDataset attribute)

Y

Yeo2011Dataset (class in nidata.atlas.yeo_2011)