2.1.6. nidata.atlas.msdl_atlas package

2.1.6.1. Module contents

class nidata.atlas.msdl_atlas.MSDLDataset(*args, **kwargs)[source]

Bases: nidata.core.datasets.HttpDataset

Download and load the MSDL brain atlas.

Parameters:

data_dir: string, optional

Path of the data directory. Used to force data storage in a specified location. Default: None

url: string, optional

Override download URL. Used for test only (or if you setup a mirror of the data).
Returns:

data: dict

Dictionary-like object, the interest attributes are : - ‘labels’: str. Path to csv file containing labels. - ‘maps’: str. path to nifti file containing regions definition.

References

Download:https://team.inria.fr/parietal/files/2015/01/MSDL_rois.zip
Paper to cite:Multi-subject dictionary learning to segment an atlas of brain spontaneous activity Gaël Varoquaux, Alexandre Gramfort, Fabian Pedregosa, Vincent Michel, Bertrand Thirion. Information Processing in Medical Imaging, 2011, pp. 562-573, Lecture Notes in Computer Science.
Other references:
 Learning and comparing functional connectomes across subjects. Gaël Varoquaux, R.C. Craddock NeuroImage, 2013.

Methods

fetch(url=None, resume=True, verbose=1)[source]
nidata.atlas.msdl_atlas.fetch_msdl_atlas(data_dir=None, url=None, resume=True, verbose=1)[source]